STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_02649100DNA-directed RNA polymerases II and IV subunit 5A. (361 aa)    
Predicted Functional Partners:
CKAN_00152800
DNA-directed RNA polymerases I and III subunit RPAC2.
  
 0.997
CKAN_01175400
DNA-directed RNA polymerases II, IV and V subunit 6A isoform X1.
   
 0.997
CKAN_00461800
DNA-directed RNA polymerases I and III subunit RPAC1 isoform X1.
  
 0.995
CKAN_01044600
Putative DNA-directed RNA polymerase I subunit RPA43 isoform X1.
   
 0.993
CKAN_00205900
DNA-directed RNA polymerases II, IV and V subunit 11.
   
 0.991
CKAN_00316700
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 0.991
CKAN_01958700
DNA-directed RNA polymerase II subunit 4.
   
 0.991
CKAN_01209700
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.
   
 0.991
CKAN_02559600
DNA-directed RNA polymerase III subunit RPC3.
   
 0.991
CKAN_01688400
DNA-directed RNA polymerase III subunit RPC8-like protein.
   
 0.990
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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