STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_02675400Pectate lyase. (442 aa)    
Predicted Functional Partners:
CKAN_00090500
Polygalacturonase; Belongs to the glycosyl hydrolase 28 family.
     
 0.857
CKAN_00341800
Pectinesterase.
   
 
 0.850
CKAN_02518100
Pectinesterase/pectinesterase inhibitor PPE8B.
   
 
 0.850
CKAN_01645100
Pectinesterase; Acts in the modification of cell walls via demethylesterification of cell wall pectin.
   
 
 0.849
CKAN_02349000
Putative pectinesterase/pectinesterase inhibitor 22.
    
  0.848
CKAN_02348800
Pectinesterase.
   
 
 0.846
CKAN_00478000
Pectinesterase.
   
 
 0.846
CKAN_00484400
Putative pectinesterase 53 isoform X1.
   
 
 0.846
CKAN_01112600
Putative pectinesterase 11.
   
 
 0.846
CKAN_02430900
Pectinesterase.
   
 
 0.846
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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