STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_02694500snRNA-activating protein complex. (147 aa)    
Predicted Functional Partners:
CKAN_02451700
Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family.
    
  0.961
CKAN_01089200
TATA-box-binding protein.
   
 0.934
CKAN_00901200
TATA-box-binding protein.
   
 0.934
CKAN_00770600
General transcription factor IIF subunit 2.
    
  0.925
CKAN_01175400
DNA-directed RNA polymerases II, IV and V subunit 6A isoform X1.
    
  0.922
CKAN_00515200
Transcription initiation factor IIA subunit 1-like protein.
    
  0.915
CKAN_02473100
Transcription initiation factor IIA subunit 1-like protein.
    
  0.915
CKAN_00237000
Protein EMBRYO DEFECTIVE 1674-like protein isoform X1.
    
 0.913
CKAN_01948900
DNA-directed RNA polymerases II, IV and V subunit 12.
    
 0.913
CKAN_00002200
Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.
    
  0.912
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.