STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_02720700Ribosomal protein S13 mitochondrion. (411 aa)    
Predicted Functional Partners:
CKAN_00478100
Ribosomal protein S10.
  
 0.997
CKAN_01282300
40S ribosomal protein S9-2; Belongs to the universal ribosomal protein uS4 family.
  
 0.997
CKAN_00079000
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
 0.995
CKAN_01212700
Ribosomal protein S4/S9.
  
 0.994
CKAN_02657800
Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.
  
 
 0.992
CKAN_01068100
40S ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family.
  
 0.991
CKAN_00641700
40S ribosomal protein S11; Belongs to the universal ribosomal protein uS17 family.
  
 0.991
CKAN_01450500
Ribosomal protein S12/S23.
  
 0.991
CKAN_01846200
40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.
  
 0.991
CKAN_02524900
60S ribosomal protein L27a-2; Belongs to the universal ribosomal protein uL15 family.
  
 
 0.991
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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