STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_02751900Subtilisin-like protein protease SBT3.9 isoform X1. (336 aa)    
Predicted Functional Partners:
CKAN_02751800
Subtilisin-like protein protease SBT3.5.
 
     0.635
CKAN_02752100
Subtilisin-like protein protease SBT3.3.
 
     0.628
CKAN_01664800
Subtilisin-like protein protease SBT3.5.
 
     0.569
CKAN_01665800
Peptidase S8/S53 domain-containing protein.
 
     0.560
CKAN_01384700
Subtilisin-like protein protease SBT3.5.
 
     0.558
CKAN_01665100
Subtilisin-like protein protease SBT3.3.
 
     0.554
CKAN_02741600
Peptidase S8/S53 domain-containing protein.
 
     0.544
CKAN_00770200
Subtilisin-like protein protease SBT1.6.
  
     0.520
CKAN_01665900
Subtilisin-like protein protease SBT3.8 isoform X1.
  
     0.519
CKAN_00444900
Uncharacterized protein.
 
     0.519
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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