STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHL21617.1Predicted transcription regulator, contains HTH domain, MarR family. (176 aa)    
Predicted Functional Partners:
SHL21567.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
     0.952
SHL21540.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
 
     0.870
SHL21634.1
Predicted Na+-dependent transporter.
 
     0.860
SHL21592.1
TRAP transporter, DctM subunit.
 
     0.851
SHL21516.1
5-oxoprolinase (ATP-hydrolysing).
 
     0.662
Your Current Organism:
Roseovarius pacificus
NCBI taxonomy Id: 337701
Other names: CGMCC 1.7083, DSM 29589, LMG 24575, LMG:24575, MCCC 1A00293, R. pacificus, Roseobacter sp. 812, Roseovarius pacificus Wang et al. 2009, strain 81-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.