STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHL23035.1Hypothetical protein. (81 aa)    
Predicted Functional Partners:
SHL13144.1
Phasin protein.
  
     0.685
SHL23007.1
Peptidase family M48.
 
     0.680
SHM05769.1
Hypothetical protein.
  
     0.675
SHM45472.1
SseB protein N-terminal domain-containing protein.
  
     0.660
SHL22981.1
Uncharacterized protein family UPF0029.
       0.622
SHK98614.1
Protein of unknown function.
  
     0.619
SHL11955.1
Hypothetical protein.
  
     0.582
SHM12408.1
Rhomboid family protein.
  
     0.580
SHL71813.1
Hypothetical protein.
  
     0.571
SHM45358.1
Rod shape-determining protein MreD.
  
     0.570
Your Current Organism:
Roseovarius pacificus
NCBI taxonomy Id: 337701
Other names: CGMCC 1.7083, DSM 29589, LMG 24575, LMG:24575, MCCC 1A00293, R. pacificus, Roseobacter sp. 812, Roseovarius pacificus Wang et al. 2009, strain 81-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.