STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK99697.1Two-component system, cell cycle sensor histidine kinase and response regulator CckA. (764 aa)    
Predicted Functional Partners:
SHK93497.1
PAS domain S-box-containing protein.
 
0.931
SHL55742.1
Hypothetical protein.
 
0.887
SHK93933.1
Histidine phosphotransferase ChpT.
  
 0.844
SHL78688.1
Flagellar motor switch protein FliM.
 
 
 0.802
SHK96735.1
Two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL.
 
0.799
SHL62094.1
Signal transduction histidine kinase.
 
0.685
SHL78655.1
Hypothetical protein.
  
 0.663
SHL85265.1
sigma-B regulation protein RsbU (phosphoserine phosphatase).
 
 
 0.656
SHL60558.1
Diguanylate cyclase/phosphodiesterase.
 0.643
SHL91651.1
Flagellar motor switch protein FliG.
  
  
 0.614
Your Current Organism:
Roseovarius pacificus
NCBI taxonomy Id: 337701
Other names: CGMCC 1.7083, DSM 29589, LMG 24575, LMG:24575, MCCC 1A00293, R. pacificus, Roseobacter sp. 812, Roseovarius pacificus Wang et al. 2009, strain 81-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.