STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHL05093.1Ca2+-binding protein, RTX toxin-related. (1814 aa)    
Predicted Functional Partners:
SHL89503.1
Hypothetical protein.
 
 0.691
SHL11035.1
Pectate lyase superfamily protein.
 
 
   0.684
SHM14170.1
Hemolysin-type calcium-binding repeat-containing protein.
 
0.586
SHM37803.1
Outer membrane receptor proteins, mostly Fe transport.
   
 
 0.585
SHL37845.1
Outer membrane receptor proteins, mostly Fe transport.
    
 
 0.576
SHL32678.1
Iron complex outermembrane recepter protein.
    
 
 0.576
SHL35007.1
Iron complex outermembrane recepter protein.
    
 
 0.576
SHL53704.1
Iron complex outermembrane recepter protein.
    
 
 0.576
SHM56227.1
ATP-binding cassette, subfamily C, LapB.
 
  
 0.563
SHL13725.1
Hypothetical protein.
  
     0.541
Your Current Organism:
Roseovarius pacificus
NCBI taxonomy Id: 337701
Other names: CGMCC 1.7083, DSM 29589, LMG 24575, LMG:24575, MCCC 1A00293, R. pacificus, Roseobacter sp. 812, Roseovarius pacificus Wang et al. 2009, strain 81-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.