STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHL16986.1Sarcosine oxidase subunit beta. (417 aa)    
Predicted Functional Partners:
SHL16929.1
Sarcosine oxidase subunit alpha; Belongs to the GcvT family.
 
 0.998
SHM35966.1
Sarcosine oxidase subunit alpha; Belongs to the GcvT family.
 
 0.998
SHL90563.1
Sarcosine oxidase subunit alpha; Belongs to the GcvT family.
 
 0.991
SHM35942.1
Sarcosine oxidase subunit delta.
 
  0.988
SHL16960.1
Sarcosine oxidase subunit delta.
 
  0.983
SHL16906.1
Sarcosine oxidase subunit gamma.
 
  0.982
SHL90539.1
Sarcosine oxidase subunit delta.
 
 0.934
SHM35994.1
Sarcosine oxidase subunit gamma.
 
  0.921
SHM35909.1
N-methylglutamate dehydrogenase subunit A precursor.
  
  
 
0.917
SHM06582.1
N-methylglutamate synthase subunit B.
 
  
  0.820
Your Current Organism:
Roseovarius pacificus
NCBI taxonomy Id: 337701
Other names: CGMCC 1.7083, DSM 29589, LMG 24575, LMG:24575, MCCC 1A00293, R. pacificus, Roseobacter sp. 812, Roseovarius pacificus Wang et al. 2009, strain 81-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.