STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHL37674.1Biopolymer transport protein ExbD. (128 aa)    
Predicted Functional Partners:
SHL37701.1
Outer membrane transport energization protein TonB.
 
 
 0.993
SHL37607.1
Outer membrane transport energization protein ExbB.
 
 
 0.988
SHL37642.1
Outer membrane transport energization protein ExbD.
 
     0.955
SHL37581.1
Hypothetical protein.
 
     0.952
SHM53989.1
Outer membrane transport energization protein TonB.
  
 
 0.884
SHM54069.1
Biopolymer transport protein ExbB.
 
 
 0.876
SHL98478.1
Cell division and transport-associated protein TolA.
  
 
 0.864
tolQ
Cell division and transport-associated protein TolQ; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 
 0.829
SHM31431.1
Outer membrane transport energization protein ExbB.
  
 
 0.826
SHL37810.1
Iron complex transport system ATP-binding protein.
  
  
 0.728
Your Current Organism:
Roseovarius pacificus
NCBI taxonomy Id: 337701
Other names: CGMCC 1.7083, DSM 29589, LMG 24575, LMG:24575, MCCC 1A00293, R. pacificus, Roseobacter sp. 812, Roseovarius pacificus Wang et al. 2009, strain 81-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.