STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHL54885.1Hint domain-containing protein. (335 aa)    
Predicted Functional Partners:
SHL64476.1
DNA translocase FtsK.
    
 
 0.911
SHL51991.1
Subtilase family protein.
  
 0.765
SHL86269.1
Hypothetical protein.
  
 0.763
SHM25000.1
Carboxyl-terminal processing protease; Belongs to the peptidase S41A family.
  
   0.751
SHL11035.1
Pectate lyase superfamily protein.
 
 0.742
SHL55335.1
Phage gp6-like head-tail connector protein.
  
 0.690
SHM30525.1
AMP-binding enzyme.
  
 
 0.666
SHL84201.1
Core-2/I-Branching enzyme.
  
     0.652
SHM35300.1
GDSL-like Lipase/Acylhydrolase family protein.
 
 
  0.645
SHK95484.1
Acyl carrier protein.
   
 
 0.644
Your Current Organism:
Roseovarius pacificus
NCBI taxonomy Id: 337701
Other names: CGMCC 1.7083, DSM 29589, LMG 24575, LMG:24575, MCCC 1A00293, R. pacificus, Roseobacter sp. 812, Roseovarius pacificus Wang et al. 2009, strain 81-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.