STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHL48859.1BMFP domain-containing protein YqiC. (81 aa)    
Predicted Functional Partners:
lgt
Prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family.
 
     0.742
SHL48909.1
SAM-dependent methyltransferase, MidA family.
       0.708
SHL48933.1
Conserved hypothetical protein; Belongs to the multicopper oxidase YfiH/RL5 family.
       0.708
SHM46211.1
SH3-like domain-containing protein.
  
     0.623
SHL02876.1
Ribbon-helix-helix domain-containing protein.
  
     0.587
SHL22775.1
GcrA cell cycle regulator.
  
     0.584
SHL09295.1
Cobaltochelatase CobT subunit.
  
     0.552
SHL09100.1
DnaJ domain-containing protein.
  
     0.509
SHL48826.1
Hypothetical protein.
 
     0.504
SHM45150.1
Uncharacterized protein, UPF0262 family; Belongs to the UPF0262 family.
  
     0.477
Your Current Organism:
Roseovarius pacificus
NCBI taxonomy Id: 337701
Other names: CGMCC 1.7083, DSM 29589, LMG 24575, LMG:24575, MCCC 1A00293, R. pacificus, Roseobacter sp. 812, Roseovarius pacificus Wang et al. 2009, strain 81-2
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.