STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHL65801.1Ribonuclease T2; Belongs to the RNase T2 family. (209 aa)    
Predicted Functional Partners:
SHL65837.1
Hypothetical protein.
       0.698
SHL08314.1
Predicted 5' DNA nuclease, flap endonuclease-1-like, helix-3-turn-helix (H3TH) domain.
  
     0.522
SHL78857.1
Hypothetical protein.
  
     0.497
SHM39605.1
Exodeoxyribonuclease-5.
  
     0.460
SHM12978.1
Protein of unknown function.
  
    0.444
SHM44883.1
Extensin-like protein C-terminus.
  
     0.409
SHL49991.1
Hypothetical protein.
  
     0.406
SHL20354.1
L,D-transpeptidase catalytic domain.
  
     0.402
Your Current Organism:
Roseovarius pacificus
NCBI taxonomy Id: 337701
Other names: CGMCC 1.7083, DSM 29589, LMG 24575, LMG:24575, MCCC 1A00293, R. pacificus, Roseobacter sp. 812, Roseovarius pacificus Wang et al. 2009, strain 81-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.