STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHL74559.1Hypothetical protein. (110 aa)    
Predicted Functional Partners:
SHL02688.1
Lactoylglutathione lyase.
   
    0.689
SHL13562.1
Lactoylglutathione lyase.
   
    0.689
SHM69341.1
Lactoylglutathione lyase.
   
    0.689
SHL66568.1
Universal stress protein family protein.
  
     0.682
SHL22956.1
Hypothetical protein.
  
     0.665
SHM06010.1
Hypothetical protein.
  
     0.611
SHL62222.1
Hypothetical protein.
  
     0.574
SHL66877.1
Cytochrome oxidase maturation protein, cbb3-type.
  
     0.552
SHL66822.1
Nitrogen fixation protein FixH.
  
     0.534
SHL74529.1
Hypothetical protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
       0.473
Your Current Organism:
Roseovarius pacificus
NCBI taxonomy Id: 337701
Other names: CGMCC 1.7083, DSM 29589, LMG 24575, LMG:24575, MCCC 1A00293, R. pacificus, Roseobacter sp. 812, Roseovarius pacificus Wang et al. 2009, strain 81-2
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