STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHL73263.1NADP-dependent 3-hydroxy acid dehydrogenase YdfG. (215 aa)    
Predicted Functional Partners:
SHM50890.1
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II.
  
 0.952
SHL73291.1
Hypothetical protein.
       0.818
SHL83666.1
Glutamate synthase (NADPH) large subunit.
     
 0.736
SHL39137.1
Ferredoxin-NADP reductase.
   
 0.678
SHM59986.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.
   
 0.678
SHL73345.1
8-oxo-dGTP pyrophosphatase MutT, NUDIX family.
   
  0.628
SHL73233.1
Aspartate kinase; Belongs to the aspartokinase family.
       0.611
nuoI
NADH dehydrogenase subunit I; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.
    
 0.576
SHM24808.1
Choline-sulfatase.
   
 
 0.570
SHM26332.1
ATP-dependent DNA helicase RecQ.
    
 
 0.570
Your Current Organism:
Roseovarius pacificus
NCBI taxonomy Id: 337701
Other names: CGMCC 1.7083, DSM 29589, LMG 24575, LMG:24575, MCCC 1A00293, R. pacificus, Roseobacter sp. 812, Roseovarius pacificus Wang et al. 2009, strain 81-2
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