STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHL81759.1FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family. (455 aa)    
Predicted Functional Partners:
SHL81732.1
FMN reductase.
 
 0.924
SHL81813.1
ABC-type nitrate/sulfonate/bicarbonate transport system, substrate-binding protein.
 
 
 0.904
SHL81786.1
Sulfonate transport system permease protein.
 
 
 0.889
SHL81847.1
NitT/TauT family transport system ATP-binding protein/sulfonate transport system ATP-binding protein.
  
 
 0.731
SHL48027.1
Dihydropyrimidine dehydrogenase (NAD+) subunit PreA.
    
  0.657
SHM50890.1
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II.
    
 0.614
SHM65997.1
Maleamate amidohydrolase.
 
 
  0.547
SHL81703.1
Uncharacterized NAD(P)/FAD-binding protein YdhS.
 
  
  0.526
SHM12686.1
Chromate reductase.
  
 0.496
SHM46050.1
Flavin reductase.
  
 
 0.484
Your Current Organism:
Roseovarius pacificus
NCBI taxonomy Id: 337701
Other names: CGMCC 1.7083, DSM 29589, LMG 24575, LMG:24575, MCCC 1A00293, R. pacificus, Roseobacter sp. 812, Roseovarius pacificus Wang et al. 2009, strain 81-2
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