STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHL93860.1Hypothetical protein. (211 aa)    
Predicted Functional Partners:
SHL93833.1
Metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family.
 
     0.750
SHM07823.1
Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM domains.
  
    0.689
SHL59245.1
Lipid A oxidase.
  
    0.530
SHM07716.1
Type I restriction enzyme, S subunit.
  
    0.518
SHM26256.1
Type I restriction enzyme, S subunit.
  
    0.518
SHM26204.1
Type I restriction enzyme, R subunit.
  
    0.479
SHM41828.1
Type I restriction enzyme, R subunit; Subunit R is required for both nuclease and ATPase activities, but not for modification.
  
    0.479
SHM63694.1
Meiotically up-regulated gene 113.
  
    0.479
SHM71515.1
Type I restriction and modification enzyme-subunit R C terminal.
  
    0.479
SHM25783.1
Opacity protein.
   
    0.467
Your Current Organism:
Roseovarius pacificus
NCBI taxonomy Id: 337701
Other names: CGMCC 1.7083, DSM 29589, LMG 24575, LMG:24575, MCCC 1A00293, R. pacificus, Roseobacter sp. 812, Roseovarius pacificus Wang et al. 2009, strain 81-2
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.