STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM20274.1Predicted kinase, aminoglycoside phosphotransferase (APT) family. (346 aa)    
Predicted Functional Partners:
SHM20339.1
acyl-CoA dehydrogenase.
 0.991
SHM64892.1
acyl-CoA dehydrogenase.
 
 0.923
SHM20468.1
Acetyl-CoA acetyltransferase.
 
 0.848
SHM20365.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
 
   0.828
SHM20309.1
fatty-acyl-CoA synthase.
 
   0.823
SHM20433.1
Hypothetical protein.
       0.749
SHM20397.1
Acyl-CoA synthetase (NDP forming).
       0.746
SHM20502.1
TRAP transporter, 4TM/12TM fusion protein.
       0.746
SHM50890.1
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II.
  
 0.727
SHM20246.1
acetyl-CoA C-acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
  
 0.673
Your Current Organism:
Roseovarius pacificus
NCBI taxonomy Id: 337701
Other names: CGMCC 1.7083, DSM 29589, LMG 24575, LMG:24575, MCCC 1A00293, R. pacificus, Roseobacter sp. 812, Roseovarius pacificus Wang et al. 2009, strain 81-2
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.