STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM20742.1TRAP-type C4-dicarboxylate transport system, small permease component. (181 aa)    
Predicted Functional Partners:
SHM20694.1
TRAP transporter, DctM subunit.
  
  0.858
SHM20664.1
Nucleoside-diphosphate-sugar epimerase.
 
     0.773
SHM20774.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
 
    0.744
SHM20634.1
Protein of unknown function.
       0.637
SHM20602.1
Hypothetical protein.
       0.635
SHM20566.1
Transcriptional regulator, IclR family.
       0.443
SHM20468.1
Acetyl-CoA acetyltransferase.
 
     0.442
SHM20801.1
Putative cyclase.
       0.428
SHL15910.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
 
    0.425
SHM20433.1
Hypothetical protein.
 
     0.418
Your Current Organism:
Roseovarius pacificus
NCBI taxonomy Id: 337701
Other names: CGMCC 1.7083, DSM 29589, LMG 24575, LMG:24575, MCCC 1A00293, R. pacificus, Roseobacter sp. 812, Roseovarius pacificus Wang et al. 2009, strain 81-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.