STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM17931.1Two-component sensor histidine kinase, contains HisKA and HATPase domains. (591 aa)    
Predicted Functional Partners:
SHM18030.1
Response regulator receiver protein.
 
  
 0.972
SHM17966.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
   
 0.955
SHK93497.1
PAS domain S-box-containing protein.
    
 0.947
SHL55742.1
Hypothetical protein.
    
 0.862
SHL62094.1
Signal transduction histidine kinase.
    
 0.810
SHM17995.1
Hypothetical protein.
       0.773
SHM54188.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
   
 0.681
SHM18223.1
PRC-barrel domain-containing protein.
 
     0.623
SHM17894.1
Predicted small secreted protein.
       0.605
SHM18087.1
Membrane-anchored ribosome-binding protein, inhibits growth in stationary phase, ElaB/YqjD/DUF883 family.
 
     0.569
Your Current Organism:
Roseovarius pacificus
NCBI taxonomy Id: 337701
Other names: CGMCC 1.7083, DSM 29589, LMG 24575, LMG:24575, MCCC 1A00293, R. pacificus, Roseobacter sp. 812, Roseovarius pacificus Wang et al. 2009, strain 81-2
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