STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM30209.1Hypothetical protein. (515 aa)    
Predicted Functional Partners:
SHM30303.1
Glycosyltransferase, GT2 family.
 
  
 0.895
SHM30243.1
Hypothetical protein.
 
  
 0.880
SHM30175.1
Protein of unknown function.
 
     0.877
SHM30463.1
Glycosyltransferase involved in cell wall bisynthesis.
 
 
 0.852
SHK97783.1
NDP-sugar epimerase, includes UDP-GlcNAc-inverting 4,6-dehydratase FlaA1 and capsular polysaccharide biosynthesis protein EpsC.
  
  
 0.819
SHM30365.1
Glycosyltransferase involved in cell wall bisynthesis.
 
  
 0.806
SHM30551.1
Glycosyltransferase involved in cell wall bisynthesis.
 
 
 0.783
SHM29780.1
Polysaccharide chain length determinant protein, PEP-CTERM locus subfamily.
 
  
 0.779
SHM29754.1
Chromosome partitioning ATPase, Mrp family, contains Fe-S cluster.
 
  
 0.756
SHM13573.1
Mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
  
 0.743
Your Current Organism:
Roseovarius pacificus
NCBI taxonomy Id: 337701
Other names: CGMCC 1.7083, DSM 29589, LMG 24575, LMG:24575, MCCC 1A00293, R. pacificus, Roseobacter sp. 812, Roseovarius pacificus Wang et al. 2009, strain 81-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.