STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM42911.1Hypothetical protein. (725 aa)    
Predicted Functional Partners:
SHM42941.1
EcoRII C terminal.
       0.695
SHM42977.1
T/G mismatch-specific endonuclease; May nick specific sequences that contain T:G mispairs resulting from m5C-deamination.
       0.695
SHM43010.1
DNA (cytosine-5)-methyltransferase 1.
       0.628
SHM07513.1
Phage integrase family protein.
  
     0.547
SHM42808.1
Transcriptional regulator, XRE family.
  
    0.482
SHM42770.1
Hypothetical protein.
       0.471
SHM42842.1
Queuosine biosynthesis protein QueC.
       0.471
SHM42877.1
Hypothetical protein.
       0.471
SHM04080.1
Hypothetical protein.
 
     0.443
SHM43044.1
Putative DNA-binding domain-containing protein.
       0.417
Your Current Organism:
Roseovarius pacificus
NCBI taxonomy Id: 337701
Other names: CGMCC 1.7083, DSM 29589, LMG 24575, LMG:24575, MCCC 1A00293, R. pacificus, Roseobacter sp. 812, Roseovarius pacificus Wang et al. 2009, strain 81-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.