Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHK99421.1 | SHM50351.1 | SAMN05444398_101229 | SAMN05444398_11923 | Single-strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism. | TatD DNase family protein. | 0.514 |
SHK99421.1 | dnaX | SAMN05444398_101229 | SAMN05444398_104217 | Single-strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism. | DNA polymerase-3 subunit gamma/tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.981 |
SHM50284.1 | SHM50320.1 | SAMN05444398_11921 | SAMN05444398_11922 | Hypothetical protein. | Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase. | 0.854 |
SHM50284.1 | SHM50351.1 | SAMN05444398_11921 | SAMN05444398_11923 | Hypothetical protein. | TatD DNase family protein. | 0.813 |
SHM50284.1 | SHM50378.1 | SAMN05444398_11921 | SAMN05444398_11924 | Hypothetical protein. | DNA polymerase III, delta prime subunit. | 0.837 |
SHM50284.1 | SHM50434.1 | SAMN05444398_11921 | SAMN05444398_11926 | Hypothetical protein. | D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6); Belongs to the peptidase S11 family. | 0.813 |
SHM50284.1 | SHM50469.1 | SAMN05444398_11921 | SAMN05444398_11927 | Hypothetical protein. | Sporulation related domain-containing protein. | 0.803 |
SHM50284.1 | tmk | SAMN05444398_11921 | SAMN05444398_11925 | Hypothetical protein. | Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family. | 0.813 |
SHM50320.1 | SHM50284.1 | SAMN05444398_11922 | SAMN05444398_11921 | Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase. | Hypothetical protein. | 0.854 |
SHM50320.1 | SHM50351.1 | SAMN05444398_11922 | SAMN05444398_11923 | Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase. | TatD DNase family protein. | 0.813 |
SHM50320.1 | SHM50378.1 | SAMN05444398_11922 | SAMN05444398_11924 | Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase. | DNA polymerase III, delta prime subunit. | 0.837 |
SHM50320.1 | SHM50434.1 | SAMN05444398_11922 | SAMN05444398_11926 | Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase. | D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6); Belongs to the peptidase S11 family. | 0.813 |
SHM50320.1 | SHM50469.1 | SAMN05444398_11922 | SAMN05444398_11927 | Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase. | Sporulation related domain-containing protein. | 0.803 |
SHM50320.1 | tmk | SAMN05444398_11922 | SAMN05444398_11925 | Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase. | Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family. | 0.815 |
SHM50351.1 | SHK99421.1 | SAMN05444398_11923 | SAMN05444398_101229 | TatD DNase family protein. | Single-strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism. | 0.514 |
SHM50351.1 | SHM50284.1 | SAMN05444398_11923 | SAMN05444398_11921 | TatD DNase family protein. | Hypothetical protein. | 0.813 |
SHM50351.1 | SHM50320.1 | SAMN05444398_11923 | SAMN05444398_11922 | TatD DNase family protein. | Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase. | 0.813 |
SHM50351.1 | SHM50378.1 | SAMN05444398_11923 | SAMN05444398_11924 | TatD DNase family protein. | DNA polymerase III, delta prime subunit. | 0.863 |
SHM50351.1 | SHM50434.1 | SAMN05444398_11923 | SAMN05444398_11926 | TatD DNase family protein. | D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6); Belongs to the peptidase S11 family. | 0.791 |
SHM50351.1 | SHM50469.1 | SAMN05444398_11923 | SAMN05444398_11927 | TatD DNase family protein. | Sporulation related domain-containing protein. | 0.748 |
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