STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM51104.1Hypothetical protein. (153 aa)    
Predicted Functional Partners:
SHM50950.1
Carbon-monoxide dehydrogenase large subunit.
 
 0.939
SHM51042.1
Carbon-monoxide dehydrogenase medium subunit.
 
 
 0.918
SHL03551.1
Carbon-monoxide dehydrogenase medium subunit.
 
 
 0.841
SHL03579.1
Xanthine dehydrogenase, molybdenum binding subunit apoprotein.
 
 0.829
SHL19494.1
Carbon-monoxide dehydrogenase large subunit.
 
 0.820
SHM51016.1
Carbon-monoxide dehydrogenase small subunit.
    
  0.819
SHL03767.1
Hypothetical protein.
 
     0.782
SHL38662.1
2-furoyl-CoA dehydrogenase FAD binding subunit.
 
 
 0.777
SHM50917.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
       0.773
SHM50986.1
Metallo-beta-lactamase superfamily protein.
       0.773
Your Current Organism:
Roseovarius pacificus
NCBI taxonomy Id: 337701
Other names: CGMCC 1.7083, DSM 29589, LMG 24575, LMG:24575, MCCC 1A00293, R. pacificus, Roseobacter sp. 812, Roseovarius pacificus Wang et al. 2009, strain 81-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.