STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM61298.1FAD/FMN-containing dehydrogenase. (482 aa)    
Predicted Functional Partners:
SHL76163.1
NAD-dependent formate dehydrogenase flavoprotein subunit.
   
 
 0.849
SHM61267.1
Acetolactate synthase-1/2/3 large subunit; Belongs to the TPP enzyme family.
   
 0.846
SHM39451.1
Glycerol-3-phosphate acyltransferase.
    
 0.832
ubiA
4-hydroxybenzoate polyprenyltransferase; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3-octaprenyl-4-hydroxybenzoate.
    
 0.758
SHL75846.1
L-lactate dehydrogenase (cytochrome).
  
 0.756
SHM08376.1
L-lactate dehydrogenase (cytochrome).
  
 0.756
SHM70581.1
Electron transfer flavoprotein alpha subunit apoprotein.
 
 
 0.706
SHL54468.1
Glycolate oxidase FAD binding subunit.
  
 
0.693
SHL83666.1
Glutamate synthase (NADPH) large subunit.
    
 0.668
SHL54442.1
Glycolate oxidase iron-sulfur subunit.
 
 
 0.662
Your Current Organism:
Roseovarius pacificus
NCBI taxonomy Id: 337701
Other names: CGMCC 1.7083, DSM 29589, LMG 24575, LMG:24575, MCCC 1A00293, R. pacificus, Roseobacter sp. 812, Roseovarius pacificus Wang et al. 2009, strain 81-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.