Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHM00125.1 | SHM26113.1 | SAMN05444398_108121 | SAMN05444398_11282 | Cytochrome c. | Hypothetical protein. | 0.966 |
SHM00125.1 | SHM63610.1 | SAMN05444398_108121 | SAMN05444398_1278 | Cytochrome c. | Hypothetical protein. | 0.860 |
SHM00125.1 | polA | SAMN05444398_108121 | SAMN05444398_103255 | Cytochrome c. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.562 |
SHM00125.1 | rpoA | SAMN05444398_108121 | SAMN05444398_1011105 | Cytochrome c. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.907 |
SHM00125.1 | rpoB | SAMN05444398_108121 | SAMN05444398_12313 | Cytochrome c. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.916 |
SHM00125.1 | rpoZ | SAMN05444398_108121 | SAMN05444398_10248 | Cytochrome c. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.877 |
SHM00125.1 | rpoZ-2 | SAMN05444398_108121 | SAMN05444398_10922 | Cytochrome c. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.877 |
SHM26113.1 | SHM00125.1 | SAMN05444398_11282 | SAMN05444398_108121 | Hypothetical protein. | Cytochrome c. | 0.966 |
SHM26113.1 | SHM63610.1 | SAMN05444398_11282 | SAMN05444398_1278 | Hypothetical protein. | Hypothetical protein. | 0.855 |
SHM26113.1 | polA | SAMN05444398_11282 | SAMN05444398_103255 | Hypothetical protein. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.994 |
SHM26113.1 | rpoA | SAMN05444398_11282 | SAMN05444398_1011105 | Hypothetical protein. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.994 |
SHM26113.1 | rpoB | SAMN05444398_11282 | SAMN05444398_12313 | Hypothetical protein. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.994 |
SHM26113.1 | rpoC | SAMN05444398_11282 | SAMN05444398_12314 | Hypothetical protein. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.991 |
SHM26113.1 | rpoZ | SAMN05444398_11282 | SAMN05444398_10248 | Hypothetical protein. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.990 |
SHM26113.1 | rpoZ-2 | SAMN05444398_11282 | SAMN05444398_10922 | Hypothetical protein. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.990 |
SHM63557.1 | SHM63610.1 | SAMN05444398_1276 | SAMN05444398_1278 | Hypothetical protein. | Hypothetical protein. | 0.883 |
SHM63557.1 | SHM63694.1 | SAMN05444398_1276 | SAMN05444398_12711 | Hypothetical protein. | Meiotically up-regulated gene 113. | 0.888 |
SHM63610.1 | SHM00125.1 | SAMN05444398_1278 | SAMN05444398_108121 | Hypothetical protein. | Cytochrome c. | 0.860 |
SHM63610.1 | SHM26113.1 | SAMN05444398_1278 | SAMN05444398_11282 | Hypothetical protein. | Hypothetical protein. | 0.855 |
SHM63610.1 | SHM63557.1 | SAMN05444398_1278 | SAMN05444398_1276 | Hypothetical protein. | Hypothetical protein. | 0.883 |
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