STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM64805.1Crotonobetainyl-CoA:carnitine CoA-transferase CaiB; Belongs to the CoA-transferase III family. (414 aa)    
Predicted Functional Partners:
SHM40486.1
CoA-transferase family III; Belongs to the CoA-transferase III family.
  
     0.774
SHM50890.1
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II.
   
 0.653
SHM64785.1
Amino acid/amide ABC transporter substrate-binding protein, HAAT family.
       0.618
SHM64956.1
acetyl-CoA hydrolase.
   
  0.617
SHM64575.1
3-methylfumaryl-CoA hydratase.
  
 
  0.573
SHM64872.1
MaoC like domain-containing protein.
  
 
  0.566
SHM64936.1
acetyl-CoA C-acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
    
  0.550
SHM64892.1
acyl-CoA dehydrogenase.
  
 
  0.549
SHM64559.1
Citrate lyase beta subunit; Belongs to the HpcH/HpaI aldolase family.
  
 
  0.548
SHM64915.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
   
  0.546
Your Current Organism:
Roseovarius pacificus
NCBI taxonomy Id: 337701
Other names: CGMCC 1.7083, DSM 29589, LMG 24575, LMG:24575, MCCC 1A00293, R. pacificus, Roseobacter sp. 812, Roseovarius pacificus Wang et al. 2009, strain 81-2
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