STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUN57590.1Helix-turn-helix domain-containing protein. (66 aa)    
Predicted Functional Partners:
hsdR_1
DEAD/DEAH box helicase; Subunit R is required for both nuclease and ATPase activities, but not for modification.
       0.779
CUN57499.1
Type I restriction enzyme EcoR124II protein.
  
    0.778
hsdM_1
Type I restriction-modification system%2C M subunit.
       0.777
CUN57438.1
Anticodon nuclease prrc.
       0.773
CUN57274.1
Uncharacterised protein.
       0.678
CUN57328.1
Uncharacterised protein.
       0.678
CUN57229.1
Transcriptional regulator.
       0.671
CUN59922.1
AAA ATPase.
   
 
 0.588
ygaD
Competence/damage-inducible protein cinA; Belongs to the CinA family.
    
 0.577
hipA_1
HipA domain protein.
  
 
 0.517
Your Current Organism:
Bacteroides finegoldii
NCBI taxonomy Id: 338188
Other names: B. finegoldii, Bacteroides finegoldii Bakir et al. 2006, DSM 17565, JCM 13345, strain 199
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