STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hcpCSel1 repeat. (261 aa)    
Predicted Functional Partners:
cbbX
AAA ATPase.
   
 0.894
CUO14255.1
Sel1 repeat.
 
 
 
0.710
CUO14012.1
Uncharacterized conserved protein.
       0.662
CUO13975.1
Uncharacterised protein.
       0.655
CUO14059.1
Uncharacterised protein.
       0.621
CUO14100.1
Uncharacterised protein.
       0.621
CUO14171.1
Tfp pilus assembly protein%2C major pilin PilA.
       0.621
torS
PAS domain S-box.
   
 0.584
CUO14217.1
Phospholipase D/transphosphatidylase.
       0.554
mnmG
tRNA uridine 5-carboxymethylaminomethyl modification protein GidA; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family.
   
   0.524
Your Current Organism:
Bacteroides finegoldii
NCBI taxonomy Id: 338188
Other names: B. finegoldii, Bacteroides finegoldii Bakir et al. 2006, DSM 17565, JCM 13345, strain 199
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.