STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lutRTranscriptional regulator%2C GntR family. (239 aa)    
Predicted Functional Partners:
cslB
Chondroitinase-B precursor.
 
     0.838
CUO42652.1
Alginate lyase.
 
     0.831
exuT_2
Nitrate/nitrite transporter.
 
   
 0.799
CUO42679.1
Pectin degradation protein.
 
  
 0.747
fabG_1
Putative 3-oxoacyl-[acyl-carrier protein] reductase.
 
 
 0.702
CUO43151.1
Uncharacterized conserved protein%2C contains double-stranded beta-helix domain.
 
  
 0.646
CUO42493.1
Outer membrane receptor proteins%2C mostly Fe transport.
 
    0.557
CUO42531.1
RagB/SusD domain-containing protein.
 
     0.512
adaA_2
Transcriptional regulator.
  
    0.504
CUN86655.1
Abi-like protein.
    
  0.434
Your Current Organism:
Bacteroides finegoldii
NCBI taxonomy Id: 338188
Other names: B. finegoldii, Bacteroides finegoldii Bakir et al. 2006, DSM 17565, JCM 13345, strain 199
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.