STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CUO43693.1Outer membrane receptor proteins%2C mostly Fe transport. (1121 aa)    
Predicted Functional Partners:
CUO43736.1
SusD family.
 
     0.932
CUN73416.1
SusD family.
  
 
   0.808
CUN36786.1
SusD family.
  
 
   0.807
CUO42531.1
RagB/SusD domain-containing protein.
  
 
   0.806
CUN90511.1
SusD family.
  
 
   0.801
CUN97815.1
SusD family.
  
 
   0.799
CUN74103.1
SusD family.
  
 
   0.792
CUN47444.1
SusD family.
  
 
   0.790
CUO36691.1
SusD family.
  
 
   0.780
CUN97722.1
RagB/SusD domain protein.
  
 
   0.777
Your Current Organism:
Bacteroides finegoldii
NCBI taxonomy Id: 338188
Other names: B. finegoldii, Bacteroides finegoldii Bakir et al. 2006, DSM 17565, JCM 13345, strain 199
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.