Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ihfA_1Integration host factor IHF subunit alpha; Belongs to the bacterial histone-like protein family. (419 aa)    
Predicted Functional Partners:
hup_1
Bacterial nucleoid DNA-binding protein; Belongs to the bacterial histone-like protein family.
 
     0.843
rimO
Fe-S oxidoreductase; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily.
   
   0.820
ftsY
Putative recognition particle-docking protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC).
       0.816
CUP06622.1
Putative transmembrane protein.
  
     0.722
CUN71311.1
Protein of uncharacterised function (DUF3256).
  
     0.691
CUO89248.1
Uncharacterised protein.
  
    0.676
CUN69861.1
Uncharacterised protein.
  
     0.671
CUO95680.1
Uncharacterised protein.
  
     0.661
CUO47334.1
Family of uncharacterised function (DUF490).
 
     0.613
CUO06179.1
Putative lipoprotein.
  
     0.609
Your Current Organism:
Bacteroides finegoldii
NCBI taxonomy Id: 338188
Other names: B. finegoldii, Bacteroides finegoldii Bakir et al. 2006, DSM 17565, JCM 13345, strain 199
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