STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mdh_2Malate dehydrogenase; Belongs to the LDH/MDH superfamily. (333 aa)    
Predicted Functional Partners:
porA_2
Pyruvate ferredoxin/flavodoxin oxidoreductase.
  
 0.986
fumB
Putative fumarate hydratase class I%2C anaerobic; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
  
 
 0.984
gltA
Putative citrate synthase; Belongs to the citrate synthase family.
  
 0.980
maeB
Malic enzyme.
  
 0.946
gltB
Glutamate synthase large subunit.
  
 
 0.935
cfiA_2
Putative pyruvate carboxylase.
    
 0.917
mutA
methylmalonyl-CoA mutase small subunit.
    
 0.907
mutB
methylmalonyl-CoA mutase%2C large subunit.
    
 0.907
mdh_1
Putative malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family.
  
  
 
0.903
purB
Putative adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
   
 0.901
Your Current Organism:
Bacteroides finegoldii
NCBI taxonomy Id: 338188
Other names: B. finegoldii, Bacteroides finegoldii Bakir et al. 2006, DSM 17565, JCM 13345, strain 199
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