STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
adaA_3Transcriptional regulator. (325 aa)    
Predicted Functional Partners:
rhaT
Rhamnose-proton symporter.
 
  
 0.773
rhaM
L-rhamnose mutarotase; Involved in the anomeric conversion of L-rhamnose.
       0.709
rhaD
Rhamnulose-1-phosphate aldolase.
     
 0.707
araC_2
Transcriptional regulator%2C AraC family.
  
     0.677
fucO
L-1%2C2-propanediol oxidoreductase.
 
     0.677
araC_1
Transcriptional regulator%2C AraC family.
  
     0.628
melR
Transcriptional regulator%2C AraC family.
  
     0.607
rhaR_2
Transcriptional regulator%2C AraC family.
  
     0.564
rhaA
L-rhamnose isomerase; Belongs to the rhamnose isomerase family.
 
   
 0.536
rhaB_2
Rhamnulose kinase/L-fuculose kinase; Involved in the catabolism of L-rhamnose (6-deoxy-L-mannose). Catalyzes the transfer of the gamma-phosphate group from ATP to the 1- hydroxyl group of L-rhamnulose to yield L-rhamnulose 1-phosphate. Belongs to the rhamnulokinase family.
 
   
 0.535
Your Current Organism:
Bacteroides finegoldii
NCBI taxonomy Id: 338188
Other names: B. finegoldii, Bacteroides finegoldii Bakir et al. 2006, DSM 17565, JCM 13345, strain 199
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