STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUP05105.1Pregnancy-associated plasma protein-A. (353 aa)    
Predicted Functional Partners:
birA
birA%2C biotin-[acetyl-CoA-carboxylase] ligase region.
  
    0.792
yjbR
Uncharacterized protein conserved in bacteria.
       0.785
CUP04995.1
Predicted endonuclease distantly related to archaeal Holliday junction resolvase; Belongs to the UPF0102 family.
       0.665
CUO85880.1
Surface antigen.
  
     0.597
CUO92952.1
TonB-dependent receptor.
  
     0.594
CUP01778.1
Uncharacterised protein.
  
     0.583
CUP03371.1
Mac 1.
  
  
  0.564
CUO71974.1
Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain.
  
     0.562
CUO84339.1
Protein of uncharacterised function (DUF1266).
  
  
  0.497
CUP04971.1
Uncharacterised protein.
       0.494
Your Current Organism:
Bacteroides finegoldii
NCBI taxonomy Id: 338188
Other names: B. finegoldii, Bacteroides finegoldii Bakir et al. 2006, DSM 17565, JCM 13345, strain 199
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