STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000717135_03348Unannotated protein. (373 aa)    
Predicted Functional Partners:
GCA_000717135_09009
Unannotated protein.
   
 
  0.850
GCA_000717135_05725
Unannotated protein.
     
 0.816
GCA_000717135_03349
Unannotated protein.
 
     0.814
GCA_000717135_02983
Unannotated protein.
     
 0.792
GCA_000717135_09008
Unannotated protein.
   
 
  0.782
GCA_000717135_04017
Unannotated protein.
    
  0.780
GCA_000717135_03347
Unannotated protein.
       0.752
GCA_000717135_04171
Unannotated protein.
  
     0.733
GCA_000717135_02883
Unannotated protein.
  
  
  0.722
GCA_000717135_00679
Unannotated protein.
  
  
  0.720
Your Current Organism:
Catenuloplanes japonicus
NCBI taxonomy Id: 33876
Other names: ATCC 31637, Catenuliplanes japonicus, DSM 44102, IFO 14176, JCM 9106, NBRC 14176, VKM Ac-875, strain N381-16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.