STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000717135_07939Unannotated protein. (470 aa)    
Predicted Functional Partners:
GCA_000717135_09533
Unannotated protein.
  
 
 0.812
GCA_000717135_08746
Unannotated protein.
  
     0.734
GCA_000717135_06069
Unannotated protein.
  
     0.702
GCA_000717135_05299
Unannotated protein.
  
     0.634
GCA_000717135_00385
Unannotated protein.
 
 
 0.623
GCA_000717135_02983
Unannotated protein.
 
 
 0.574
GCA_000717135_01201
Unannotated protein.
  
  
 0.564
GCA_000717135_08148
Unannotated protein.
  
  
 0.564
GCA_000717135_09537
Unannotated protein.
  
  
 0.564
GCA_000717135_09269
Unannotated protein.
  
  
 0.548
Your Current Organism:
Catenuloplanes japonicus
NCBI taxonomy Id: 33876
Other names: ATCC 31637, Catenuliplanes japonicus, DSM 44102, IFO 14176, JCM 9106, NBRC 14176, VKM Ac-875, strain N381-16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.