STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A6122_0870Glycosyl transferase. (291 aa)    
Predicted Functional Partners:
A6122_0869
Transferase.
 
     0.958
A6122_0868
Glycosyl transferase family 2.
 
  
 0.945
A6122_0872
Hypothetical protein.
 
     0.763
A6122_0871
Amylosucrase.
       0.634
A6122_0867
Hypothetical protein.
       0.507
A6122_0878
Sugar ABC transporter.
 
  
 0.480
A6122_0873
AI-2E family transporter.
 
     0.471
A6122_0772
Hypothetical protein.
  
  
 0.468
A6122_1918
Hypothetical protein.
 
  
 0.457
A6122_0102
Non-ribosomal peptide synthetase.
  
  
 0.452
Your Current Organism:
Rathayibacter tritici
NCBI taxonomy Id: 33888
Other names: ATCC 11403, CCUG 23914, CIP 104038, Clavibacter tritici, Corynebacterium tritici, DSM 7486, ICMP 2626, JCM 9309, LMG 3728, LMG:3728, Pseudomonas tritici, R. tritici
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.