STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A6122_0941Short-chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (234 aa)    
Predicted Functional Partners:
A6122_0946
Glycosyl transferase.
 
 
   0.940
A6122_0942
D-beta-D-heptose 1-phosphate adenosyltransferase; Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno-heptose. In the N-terminal section; belongs to the carbohydrate kinase PfkB family.
     0.938
A6122_0945
Glycosyl transferase.
 
    0.918
A6122_0944
Glycosyl transferase.
 
    0.910
A6122_0948
Glycosyl transferase.
 
 
   0.905
A6122_0947
Haloacid dehalogenase.
 
    0.884
A6122_0943
Phosphoheptose isomerase.
 
     0.842
A6122_0940
Glycosyl transferase.
  
 
   0.789
A6122_0102
Non-ribosomal peptide synthetase.
  
 
 0.771
A6122_0936
Glycosyl transferase.
  
 
   0.686
Your Current Organism:
Rathayibacter tritici
NCBI taxonomy Id: 33888
Other names: ATCC 11403, CCUG 23914, CIP 104038, Clavibacter tritici, Corynebacterium tritici, DSM 7486, ICMP 2626, JCM 9309, LMG 3728, LMG:3728, Pseudomonas tritici, R. tritici
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