STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A6122_2376Potassium transporter Trk. (484 aa)    
Predicted Functional Partners:
A6122_2377
Potassium transporter.
 
 
 0.989
A6122_0200
Ion transporter.
  
 
 0.720
A6122_2707
Hypothetical protein.
  
 
 0.720
A6122_2375
Hypothetical protein.
       0.615
A6122_1204
Methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
  
  
 0.546
A6122_2334
Na+/H+ antiporter subunit A.
     
 0.517
topA
DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]
 
     0.465
Your Current Organism:
Rathayibacter tritici
NCBI taxonomy Id: 33888
Other names: ATCC 11403, CCUG 23914, CIP 104038, Clavibacter tritici, Corynebacterium tritici, DSM 7486, ICMP 2626, JCM 9309, LMG 3728, LMG:3728, Pseudomonas tritici, R. tritici
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.