STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KZE22510.1SAM-dependent methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (200 aa)    
Predicted Functional Partners:
KZE24508.1
Sarcosine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the GcvT family.
   
  0.888
KZE17074.1
Glycine dehydrogenase (aminomethyl-transferring); Acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the GcvP family.
  
 
  0.754
KZE24548.1
Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.727
KZE22511.1
LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family.
       0.640
KZE22512.1
Sarcosine oxidase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.546
KZE22509.1
Antibiotic biosynthesis monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.517
KZE21682.1
Serine hydroxymethyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.452
glyA
Serine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.
   
  0.452
Your Current Organism:
Brevibacterium casei
NCBI taxonomy Id: 33889
Other names: ATCC 35513, B. casei, BCRC 12214, CCM 4100, CCRC 12214, CCRC:12214, CCUG 29001, CDC coryneform group B-1, CDC coryneform group B-3, CIP 102111, DSM 20657, IFO 14812, IMET 10997, JCM 2594, KCTC 3082, KCTC 3085, NBRC 14812, NCDO 2048, NCIMB 702048, VKM Ac-2114
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