STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DnaNDNA polymerase III subunit beta; Overlaps another CDS with the same product name. (330 aa)    
Predicted Functional Partners:
DnaA
Chromosomal replication initiator protein DnaA.
 
 
 0.991
RN09_2964
Hypothetical protein.
 
 
 0.985
RN09_4458
DNA polymerase.
 
 
 0.981
DnaQ
DNA polymerase III subunit epsilon.
   
 0.980
dnaX
DNA polymerase III subunit gamma/tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity.
 
 
 0.977
DnaE1
DNA polymerase III subunit alpha.
  
 
 0.964
UvrD2
ATP-dependent DNA helicase UvrD.
 
 0.962
RN09_2693
Hypothetical protein.
   
 0.960
RN09_0003
DNA polymerase III subunit beta; Overlaps another CDS with the same product name.
      0.957
RN09_1996
DNA polymerase I; Overlaps another CDS with the same product name.
 
 0.954
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.