STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN09_0049Hypothetical protein. (226 aa)    
Predicted Functional Partners:
RN09_0050
MFS-type transporter.
       0.815
RN09_1189
Hypothetical protein.
 
     0.729
RN09_0051
Hypothetical protein; Belongs to the UPF0301 (AlgH) family.
       0.708
RN09_1014
Hypothetical protein.
      
 0.657
RN09_1152
Hypothetical protein.
      
 0.654
RN09_1074
Transmembrane protein.
  
     0.570
RN09_3372
Hypothetical protein.
 
     0.491
FadE12
acyl-CoA dehydrogenase FadE12.
 
     0.487
RN09_3525
TetR family HTH-type transcriptional regulator.
 
     0.451
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.