Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CelA1Cellulase CelA; Belongs to the glycosyl hydrolase family 6. (307 aa)    
Predicted Functional Partners:
CelA2b
Glycosyl hydrolase family 12; Belongs to the glycosyl hydrolase 12 (cellulase H) family.
  
  
  0.942
RN09_1240
Hypothetical protein.
  
 
 0.694
RN09_0390
Beta-1,3-glucanase.
 
   
 0.564
RN09_0075
Hypothetical protein.
       0.562
RN09_0077
Oxidoreductase.
 
   
 0.526
RN09_1360
Glycosyl hydrolase.
 
   
 0.523
RN09_0635
Hypothetical protein.
 
 
 0.517
RN09_4774
Alanine/proline-rich protein; Overlaps another CDS with the same product name.
 
 
 0.496
RN09_0556
Transcriptional regulator.
  
     0.475
RN09_1334
Hypothetical protein.
  
 
 0.452
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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