Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
HycPHydrogenase HycP. (220 aa)    
Predicted Functional Partners:
HycE
Formate hydrogenase HycE; Overlaps another CDS with the same product name.
 
  
 0.999
RN09_0111
Formate hydrogenase HycE; Overlaps another CDS with the same product name.
 
  
 0.999
HycQ
Hydrogenase HycQ.
 
  
 0.996
RN09_0104
Oxidoreductase; Overlaps another CDS with the same product name.
 
  
 0.988
RN09_0105
Oxidoreductase; Overlaps another CDS with the same product name.
 
  
 0.988
RN09_0106
Oxidoreductase; Overlaps another CDS with the same product name.
 
  
 0.988
HycD
Formate hydrogenlyase HycD.
 
  
 0.986
RN09_0103
HTH-type transcriptional regulator.
 
  
 0.812
RN09_0112
Polyketide cyclase/dehydrase.
       0.431
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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