STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN09_0129Integral membrane protein; Overlaps another CDS with the same product name. (536 aa)    
Predicted Functional Partners:
RN09_0130
Integral membrane protein; Overlaps another CDS with the same product name.
   
 0.994
QcrC
Ubiquinol-cytochrome C reductase cytochrome subunit C.
 
  
 0.775
QcrB
Ubiquinol-cytochrome C reductase cytochrome subunit B.
 
  
 0.729
QcrA
Ubiquinol-cytochrome C reductase rieske iron-sulfur subunit.
 
    0.718
RN09_4744
ESX-1 secretion system protein EccE1.
  
     0.694
RN09_4738
ESX-1 secretion system protein EccD1; Overlaps another CDS with the same product name.
  
     0.668
RN09_2702
Cytochrome c oxidase polypeptide 4; Part of cytochrome c oxidase, its function is unknown. Belongs to the cytochrome c oxidase bacterial subunit CtaF family.
  
     0.652
RN09_0646
Transmembrane protein.
 
     0.648
CtaE
Cytochrome C oxidase subunit III.
 
  
 0.641
RN09_3887
ATP-dependent DNA helicase; Overlaps another CDS with the same product name.
  
     0.636
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.