Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CtpBCation-transporter P-type ATPase B; Overlaps another CDS with the same product name. (570 aa)    
Predicted Functional Partners:
RN09_0131
Cation-transporter P-type ATPase B; Overlaps another CDS with the same product name.
     0.994
RN09_2454
Cation transporter ATPase G.
 
   
 0.976
kdpA
Potassium-transporting ATPase subunit A; Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane.
      
 0.713
CtpH
Metal cation transporting ATPase H.
 
 
0.554
CtpI
Cation-transporter ATPase I; Overlaps another CDS with the same product name.
 
 
0.544
RN09_0133
Hypothetical protein.
       0.527
CtpD
Cobalt/nickel-exporting P-type ATPase.
  
   
0.512
CtpF
Cation transporter ATPase F.
 
 
0.499
SodC
Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family.
    
 0.485
CtpJ
Cation transporter ATPase J.
  
   
0.448
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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