Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN09_0144Transmembrane acyltransferase; Overlaps another CDS with the same product name. (304 aa)    
Predicted Functional Partners:
RN09_0143
Transmembrane acyltransferase; Overlaps another CDS with the same product name.
     0.981
RN09_2482
Hypothetical protein.
 
     0.740
RN09_3311
Transmembrane alanine/glycine-rich protein.
 
     0.740
RN09_2174
Hypothetical protein.
 
     0.737
tatA
Sec-independent protein translocase membrane-bound protein TatA; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.
      
 0.735
RN09_4387
Hypothetical protein.
  
     0.724
RN09_3043
Glycerol-3-phosphate acyltransferase; Overlaps another CDS with the same product name.
 
     0.707
CysM
O-phosphoserine sulfhydrylase.
      
 0.699
RN09_0545
Hypothetical protein.
  
     0.666
RN09_0141
Integral membrane protein; Overlaps another CDS with the same product name.
     
 0.657
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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