Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN09_0163Transmembrane protein. (246 aa)    
Predicted Functional Partners:
RN09_0162
Maltokinase.
       0.756
RN09_0250
Transmembrane protein.
 
     0.714
RN09_3334
Arginine-rich protein.
 
     0.710
TreS
Trehalose synthase/amylase TreS.
       0.688
PapA1
Acyltransferase PapA.
  
     0.680
PapA2
Trehalose-2-sulfate acyltransferase.
  
     0.668
RN09_2870
Transmembrane transport protein MmpL9; Overlaps another CDS with the same product name.
  
     0.658
PapA3
Acyltransferase PapA.
  
     0.626
RN09_0842
Transmembrane transport protein MmpL5; Overlaps another CDS with the same product name.
  
     0.595
RN09_3958
Hypothetical protein.
  
     0.595
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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